R6 Checklist for MolecularDefinition

Artifact MolecularDefinition (MolecularDefinition)

Urgent Item Checklist

All Analysis Information

The following content was generated to assist in the review of this artifact for R6 compliance.

Information Page

General Information:

Page File Name moleculardefinition-introduction.xml
Responsible Workgroup cg
Maturity Label Draft
Maturity Level 0
Standards Status trial-use
Management Comments
Workgroup Comments
Exists In publish.ini No
Exists In Source Directory Yes
'deprecated' Literal Count 0
Zulip Link Count 0
Confluence Link Count 0

Conformance Language Summary

'Conformant' conformance language appears in all-upper case. 'Non-conformant' covers all other cases appearing in the content.

Literal Conformant Non-Conformant
SHALL 0 0
SHALL NOT 0 0
SHOULD 0 1
SHOULD NOT 0 0
MAY 0 0
MAY NOT 0 0

Possibly Removed FHIR Artifact Literals Found on Page

Word Artifact Class

Unknown Words Found on Page

Word Known Typo
MolecularDefintionNo
biomarkers,No
genome/exomeNo
pharmacogenomicNo

Images with Issues

Source Missing Alt Text Not In Figure Tag

Possible Incomplete Markers Found on Page

Reader Review Notes Found on Page

Notes Page

General Information:

Page File Name moleculardefinition-notes.xml
Responsible Workgroup cg
Maturity Label Draft
Maturity Level 0
Standards Status trial-use
Management Comments
Workgroup Comments
Exists In publish.ini No
Exists In Source Directory Yes
'deprecated' Literal Count 0
Zulip Link Count 0
Confluence Link Count 0

Conformance Language Summary

'Conformant' conformance language appears in all-upper case. 'Non-conformant' covers all other cases appearing in the content.

Literal Conformant Non-Conformant
SHALL 0 0
SHALL NOT 0 0
SHOULD 1 2
SHOULD NOT 0 0
MAY 0 4
MAY NOT 0 0

Possibly Removed FHIR Artifact Literals Found on Page

Word Artifact Class

Unknown Words Found on Page

Word Known Typo
(IUBMB)No
AsxNo
GenBank)No
GlnNo
GlxNo
IUPACNo
XaaNo
biobank).No
contigNo
coordinateIntervalNo
copyCountNo
ordinalIndexNo
replacedMolecule)No
replacementMoleculeNo
replacementMolecule.No
sequenceElementNo
sequenceMotifNo
startingMoleculeNo

Images with Issues

Source Missing Alt Text Not In Figure Tag

Possible Incomplete Markers Found on Page

Reader Review Notes Found on Page

Element Review

Path Is Required Not Array Trial Use Has fixed[x] Has pattern[x] Required Binding External Required Binding Check meaningWhenMissing Is Modifier
MolecularDefinition X
MolecularDefinition.identifier X
MolecularDefinition.description
MolecularDefinition.moleculeType
MolecularDefinition.type X
MolecularDefinition.topology X
MolecularDefinition.member X
MolecularDefinition.location X
MolecularDefinition.location.sequenceLocation
MolecularDefinition.location.sequenceLocation.sequenceContext X
MolecularDefinition.location.sequenceLocation.coordinateInterval
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.system
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.origin
MolecularDefinition.location.sequenceLocation.coordinateInterval.coordinateSystem.normalizationMethod
MolecularDefinition.location.sequenceLocation.coordinateInterval.start[x]
MolecularDefinition.location.sequenceLocation.coordinateInterval.end[x]
MolecularDefinition.location.sequenceLocation.strand
MolecularDefinition.location.cytobandLocation
MolecularDefinition.location.cytobandLocation.genomeAssembly X
MolecularDefinition.location.cytobandLocation.genomeAssembly.organism
MolecularDefinition.location.cytobandLocation.genomeAssembly.build
MolecularDefinition.location.cytobandLocation.genomeAssembly.accession
MolecularDefinition.location.cytobandLocation.genomeAssembly.description[x]
MolecularDefinition.location.cytobandLocation.cytobandInterval X
MolecularDefinition.location.cytobandLocation.cytobandInterval.chromosome X
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.arm[x] X
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.region[x] X
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.band[x] X
MolecularDefinition.location.cytobandLocation.cytobandInterval.startCytoband.subBand[x] X
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.arm[x] X
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.region[x] X
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.band[x] X
MolecularDefinition.location.cytobandLocation.cytobandInterval.endCytoband.subBand[x] X
MolecularDefinition.representation X
MolecularDefinition.representation.focus
MolecularDefinition.representation.code X
MolecularDefinition.representation.literal
MolecularDefinition.representation.literal.encoding
MolecularDefinition.representation.literal.value X
MolecularDefinition.representation.resolvable
MolecularDefinition.representation.extracted
MolecularDefinition.representation.extracted.startingMolecule X
MolecularDefinition.representation.extracted.coordinateInterval
MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem
MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.system
MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.origin
MolecularDefinition.representation.extracted.coordinateInterval.coordinateSystem.normalizationMethod
MolecularDefinition.representation.extracted.coordinateInterval.start[x]
MolecularDefinition.representation.extracted.coordinateInterval.end[x]
MolecularDefinition.representation.extracted.reverseComplement X
MolecularDefinition.representation.repeated
MolecularDefinition.representation.repeated.sequenceMotif X
MolecularDefinition.representation.repeated.copyCount X
MolecularDefinition.representation.concatenated
MolecularDefinition.representation.concatenated.sequenceElement X X
MolecularDefinition.representation.concatenated.sequenceElement.sequence X
MolecularDefinition.representation.concatenated.sequenceElement.ordinalIndex X
MolecularDefinition.representation.relative
MolecularDefinition.representation.relative.startingMolecule X
MolecularDefinition.representation.relative.edit X
MolecularDefinition.representation.relative.edit.editOrder
MolecularDefinition.representation.relative.edit.coordinateInterval
MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem
MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.system
MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.origin
MolecularDefinition.representation.relative.edit.coordinateInterval.coordinateSystem.normalizationMethod
MolecularDefinition.representation.relative.edit.coordinateInterval.start[x]
MolecularDefinition.representation.relative.edit.coordinateInterval.end[x]
MolecularDefinition.representation.relative.edit.replacementMolecule X
MolecularDefinition.representation.relative.edit.replacedMolecule

Operations

No operations found.

Search Parameters

Id Name Publication Status FMM Standards Status IsExperimental WorkGroup Search Type Description
MolecularDefinition-identifier identifier Draft trial-use False cg token The unique identity for a particular sequence
MolecularDefinition-member member Draft trial-use False cg reference Reference to the state of the molecular member
MolecularDefinition-moleculetype moleculetype Draft trial-use False cg token Amino Acid Sequence/ DNA Sequence / RNA Sequence
MolecularDefinition-topology topology Draft trial-use False cg token The structural topology of the molecular entity (e.g., linear, circular)
MolecularDefinition-type type Draft trial-use False cg token Classification of the molecule into types other than those defined by moleculeType